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Alamdari NG, Almasi H, Moradi M, Akhgari M (2023) Characterization of carbon quantum dots synthesized from vinasse and date seeds as agro-industrial wastes

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Variants were further filtered to include a list of high quality SNPs for identification of the subject of origin of individual cells by removing all novel variants, maintaining only biallelic variants with MAF greater than 5%, a mix missing of one individual with a missing variant call at a specific site and requiring a minimum depth of two (parameters: --max-missing 1.0 min-alleles 2 max-alleles 2 removeindels snps snp.list.txt min-meanDP 2 maf 0.05 recode recode-INFO-all out)